Ronit Roy Choudhary

I build data-driven methods for RNA-seq, Hi-C, and multi-omics integration with a focus on cancer biology and biomarker discovery.

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About Me

I am a computational biology researcher focused on integrating transcriptomics, chromatin interaction data, and machine learning to answer clinically relevant questions.

My work sits at the intersection of bioinformatics, machine learning, and translational oncology. I focus on converting complex multi-omics datasets into interpretable models and decision-ready biological insights.

Research & Expertise

Research Focus

Machine learning pipelines for multi-omics disease profiling, transcriptomics, and network-based biological interpretation.

Technical Strengths

Python, R, Docker, TensorFlow, PyTorch, and reproducible bioinformatics workflows from preprocessing to modeling.

Current Direction

Developing ML models for Hi-C contact map prediction from RNA-seq and integrative analysis of cancer cohorts.

Featured Projects

gene-expression-linear-regression2

Gene-expression modeling experiments with regression-based analysis pipelines.

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mleprae-ngs-pipeline

NGS pipeline work tailored for microbial genomics and reproducible analysis.

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RNAseq_pipeline

RNA-seq analysis workflow for streamlined transcriptomic processing and downstream interpretation.

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hicverse-m2pp

Ongoing work toward robust modeling and tooling around Hi-C related computational tasks.

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